Import and export from the command-line¶

Using the import:bulk command¶

By typing php symfony help import:bulk into the command-line without specifying the path to a directory of XML files, you can see the options available on the import:bulk command, as pictured above.

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the import.

The --index option is used to enable the rebuilding of the search index as part of the import task. When using the user interface to import XML files, the import is indexed automatically - but when running an import via the command-line interface, indexing is disabled by default. This is because indexing during import can be incredibly slow, and the command-line is generally used for larger imports. Generally, we recommend a user simply clear the cache and rebuild the search index following an import - from AtoM’s root directory, run:

php symfony cc & php symfony search:populate

However, if you would like to index the import as it progresses, the --index option can be used to enable this.

The --taxonomy option is used to assist in the import of SKOS xml files, such as places and subjects, ensuring that the terms are imported to the correct taxonomy. As input, the --taxonomy option takes a taxonomy ID - these are permanent identifiers used internally in AtoM to manage the various taxonomies, which can be found in AtoM in /lib/model/QubitTaxonomy.php (see on GitHub here).

Example use: Importing terms to the Places taxonomy

php symfony import:bulk --taxonomy="42" /path/to/mySKOSfiles

Example use: Importing terms to the Subjects taxonomy

php symfony import:bulk --taxonomy="35" /path/to/mySKOSfiles

Below is a list of some of the more commonly used taxonomies in AtoM, and their IDs. This list is NOT comprehensive - to see the full list, navigate to /lib/model/QubitTaxonomy.php, or visit the Github link above.

The --completed-dir option is used to automatically move files (e.g. XML files during an import) into a completed directory after they have imported. This can be useful during troubleshooting, to determine which files have imported and which have failed. The option takes a file path to the chosen directory as its parameter. You must manually create the directory first - the task will not automatically generate one at the specified location. Example use:

php symfony import:bulk --completed-dir="/path/to/my/completed-directory"
/path/to/my/importFolder

The --schema option is deprecated and should not be used.

The --output option will generate a simple CSV file containing details of the import process, including the time elapsed and memory used during each import. To use the option, you mush specify both a path and a filename for the CSV file to output. For example:

php symfony import:bulk --output="/path/to/output-results.csv"
/path/to/my/importFolder

The CSV contains 3 columns. The first (titled “File” in the first row) will list the path and filename of each imported file. The second column (titled “Time elapsed (secs)” in the first row) indicates the time elapsed during the import of that XML file, in seconds, while the third column (titled “Memory used”) indicates the memory used during the XML import of that file, in bytes. Also included, at the bottom of the CSV, are two summary rows: Total time elapsed (in seconds), and Peak memory usage (in megabytes).

The --verbose option will return a more verbose output as each import is completed. Normally, after the import completes, a summary of the number of files imported, the time elapsed, and the memory used:

Successfully imported [x] XML/CSV files in [y] s. [z] bytes used."

… where [x] is the number of files imported, [y] is a count of the time elapsed in seconds, and [z] is the memory used in bytes.

If the --verbose command-line option is used (or just -v for short), the task will output summary information for each XML file imported, rather than a total summary. The summary information per file includes file name, time elapsed during import ( in seconds), and its position in the total count of documents to import. For example:

[filename] imported.  [x]s  [y]/[z] total

… where [x] is the time elapsed in seconds, [y] is the current file’s number and [z] is the total number of files to be imported.

The --update option can be used when you want to use an XML import to update existing archival descriptions, instead of creating new records. There are 2 modes, but only the --update="delete-and-replace mode is supported for XML imports. When used, AtoM will attempt to identify matching records, and then delete the match before proceeding with the XML import as a new record. For more information on how AtoM attempts to match incoming XML imports to existing records, see:

• Matching critera for description XML imports
• Matching criteria for EAC-CPF XML imports

The --limit option can be used with --update to increase the likelihood of a successful match by limiting the match criteria to either records belonging to a specific repository, or matching a specific existing top-level description (for archival description imports). For more information on how entities can be linked to a repository, see:

• Link an archival description to an archival institution
• Link an authority record to a repository as its maintainer

The --limit option takes the slug of the related repository or top-level archival description as its value. For example, to import a folder of EAD 2002 XML descriptions called “my-updates”, deleting any existing matches but limit the matching criteria to those descriptions linked to a repository with the slug “my-repository”, your command might look like this:

php symfony import:bulk --update="delete-and-replace" --limit="my-repository"
/path/to/my-updates

Normally, when attempting to match records, if AtoM fails to find a match candidate, it will proceed to import the row as a new record. However, you can use the --skip-unmatched option with --update to change this default behavior. When --skip-unmatched is used, then any records that do not match will be ignored during the import, and reported in the console log shown on the Job details page of the related import job (see: Manage jobs for more information). This is recommended if you are intending to only import updates to existing records. Note that --skip-unmatched will not work if it is not used in conjunction with the --update option.

Similarly, with new imports, you can use the --skip-matched option to skip any records that AtoM identifies as matching those you have already imported. This can be useful if you are uncertain if some of the XML records have been previously imported - such as when passing records to a portal site or union catalogue. Any XML data that appear to match records will be ignored during the import, and reported in the console log shown on the Job details page of the related import job. For more information on how AtoM attempts to match incoming imports to existing records, see:

• Matching critera for description XML imports
• Matching criteria for EAC-CPF XML imports

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Using the export:bulk command¶

By typing php symfony help export:bulk into the command-line without specifying the path to the target directory of exported XML files, you can see the options available on the export:bulk command, as pictured above.

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the import.

The --items-until-update option can be used for a simple visual representation of progress in the command-line. Enter a whole integer, to represent the number of XML files that should be exported before the command-line prints a period (e.g. . ) in the console, as a sort of crude progress bar. For example, entering --items-until-update=5 would mean that the import progresses, another period will be printed every 5 XML exports. This is a simple way to allow the command-line to provide a visual output of progress.

Example use reporting progress every 5 rows:

php symfony export:bulk --items-until-update=5 /path/to/my/exportFolder

This can be useful for large bulk exports, to ensure the export is still progressing, and to try to roughly determine how far the task has progressed and how long it will take to complete.

The --format option will determine whether the target export uses EAD XML, or MODS XML. When not set, the default is to export using EAD. Example use:

php symfony export:bulk --format="mods" /path/to/my/exportFolder

The --criteria option can be added if you would like to use raw SQL to target specific descriptions.

Example 1: exporting all draft descriptions

php symfony export:bulk --criteria="i.id IN (SELECT object_id FROM status
WHERE status_id = 159 AND type_id = 158)" /path/to/my/exportFolder

If you wanted to export all published descriptions instead, you could simply change the value of the status_id in the query from 159 (draft) to 160 (published).

Example 2: exporting all descriptions from a specific repository

To export all descriptions associated with a particular archival institution, you simply need to know the slug of the institution’s record in AtoM. In this example, the slug is “example-repo-slug”:

php symfony export:bulk --criteria="i.repository_id = (SELECT object_id FROM
slug WHERE slug='example-repo-slug')" /path/to/my/exportFolder

Example 3: exporting specific descriptions by title

To export 3 fonds titled: “779 King Street, Fredericton deeds,” “1991 Canada Winter Games fonds,” and “A history of Kincardine,” You can issue the following command:

sudo php symfony export:bulk --criteria="i18n.title in ('779 King Street,
Fredericton deeds', '1991 Canada Winter Games fonds', 'A history of
Kincardine')" path/to/my/exportFolder

You could add additional archival descriptions of any level of description into the query by adding a comma then another title in quotes within the ()s.

The --current-level-only option can be used to prevent AtoM from exporting any children associated with the target descriptions. If you are exporting fonds, then only the fonds-level description would be exported, and no lower-level records such as series, sub-series, files, etc. This might be useful for bulk exports when the intent is to submit the exported descriptions to a union catalogue or regional portal that only accepts collection/fonds-level descriptions. If a lower-level description (e.g. a series, file, or item) is the target of the export, it’s parents will not be exported either.

The --single-slug option can be used to to target a single archival unit (e.g. fonds, collection, etc) for export, if you know the slug of the target description.

Example use

php symfony export:bulk --single-slug="test-export"
/path/to/my/directory/test-export.xml

Important

For the export task to succeed when using the --single-slug option, you must specify not just a target output directory, but a target output file name. Exporting to path/to/my/directory/ will result in nothing being exported - you will be given a warning that the path should be a file - while exporting to path/to/my/directory/some-filename.xml will succeed. Note that the task cannot create new directories - but you can give the target file any name you wish (ending in .xml); it doesn’t need to be based on the target slug.

The --public option is useful for excluding draft records from an export. Normally, all records in a hierarchical tree will be exported regardless of publication status. Note that if a published record is the child of a draft record, it will not be included when this option is used - when the parent is skipped (as a draft record), the children are also skipped, so as not to break the established hierarchy.

Exporting EAC-CPF XML for authority records¶

In addition to the bulk export CLI tool for archival descriptions described above, AtoM also has a separate command-line task for the bulk export of authority records in EAC-CPF XML format.

The EAC-CPF XML standard is prepared and maintained by the Technical Subcommittee for Encoded Archival Context of the Society of American Archivists and the Staatsbibliothek zu Berlin, and a version of the Tag Library is available at:

• http://eac.staatsbibliothek-berlin.de/fileadmin/user_upload/schema/cpfTagLibrary.html

When using the task, EAC-CPF XML files will be exported to a directory; you must first create the target directory, and then you will specify the path to it when invoking the export command:

php symfony export:auth-recs /path/to/my/xmlExportFolder

The authority record bulk export task has the same options available as the archival description export task described above. Some of these options will not be relevant to EAC-CPF exports (e.g. the --current-level-only option, as authority records are not hierarchical; and the --public option, as currently authority records do not have a publication status), but otherwise they can be used with this task in the same way as described for the archival description export options above. Please refer there for more detailed usage notes. Below is an example application, using the --criteria option:

Example: using the --criteria option to select only authority records whose entity type is “family”

First, you will need to know the entity type ID for family. Entity type is a term maintained in the Actor entity types taxonomy - when elements from a different table in the database are linked to actors, the term ID is used. Here are the term object IDs for the Actor entity types:

We can now use the entity type to limit our export to include only those authority records with an entity type of “Family,” like so:

php symfony export:auth-recs --criteria='a.entity_type_id=133'
path/to/my/export-folder

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Validate a CSV import file via the command-line¶

This task can be run prior to import as a way of checking for common issues in CSV formatting and data preparation. Unlike the validation option supported via the user interface, the command-line task can also be pointed at a directory of CSV files to perform bulk CSV validation instead of one file at a time. However, while the user interface supports a downloadable text file report of the validation output, the command-line task will currently only output results in the console.

Details on how to interpret the results included in the console report can be found in the User Manual, here:

• CSV Validation

The basic syntax for running the validation task against a single CSV is:

php symfony csv:check-import /path/to/my/file.csv

To run validation against multiple CSVs at once, place them in a common directory accessible by AtoM and provide a path to the directory itself, instead of to an individual CSV:

php symfony csv:check-import /path/to/my/directory/

By typing php symfony help csv:check-import into the command-line from your root AtoM installation directory without specifying the location of a CSV, you will able able to see the CSV import options available (pictured above). A brief explanation of each is included below.

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the task.

The task includes two output options for the validation results - a shorter report version that does not include a sample output row and in some cases includes less details on each test outcome (and which matches what is shown in the console log on the job details page when run via the user interface), and a more detailed version with additional information intended to help you locate reported issues. If the task is run without options, the short report will be the default used. However, if you would like to see the more detailed report, you can add the --verbose (or -i for short) flag to the task, like so:

php symfony csv:check-import --verbose /path/to/my/file.csv

For archival descriptions, the task can provide some basic checks on the legacyID and parentID columns used to structure hierarchical data in the CSV, to ensure that all parentID values match a legacyID value found in the CSV. However, since CSV imports can also be used as updates to existing records, the --source option can be used to provide a source name value, that will then be used to check for matches in AtoM’s database in the keymap table from prior imports if no matches are found in the CSV.

The value provided with the --source option should match the source name value used during previous imports - AtoM will use this value to look for a match in the keymap table, and will then be able to check if parentID values in the CSV being validated match legacyID values from prior imports with the matching source name as well.

By default, the validation task expects archival description CSVs as input to be validated - at present, this entity type has the most comprehensive set of tests. However, most of the tests can be run on any CSV import type, such as checking for UTF-8 encoding and proper line endings; checking culture values; etc. The --class-name option can be used to specify a different entity type of CSV to validate. Supported options include:

• QubitInformationObject: archival description CSV (default)
• QubitActor: authority record CSV
• QubitAccession: accession record CSV
• QubitRepository: archival institution record CSV
• QubitEvent: event data CSV (used to add actor-description events via import)
• QubitRelation-actor: authority record relationship CSV

For example, to validate a CSV of authority record data, the basic task syntax would look something like the following:

php symfony csv:check-import --class-name="QubitActor" /path/to/my/authorities.csv

Run without additional options, all supported tests will be run for the selected entity when validating a CSV. However, the --specific-tests option can be used to specify only a subset of checks that should be performed when the task is executed. A brief summary of the test class names and relevant entity types is provided below - for more detailed information on each test, see the User Manual: CSV Validation.

You can include more than one test class name using the --specific-tests option, by separating each test class name by a comma. An example:

php symfony csv:check-import --specific-tests="CsvSampleValuesValidator,CsvColumnNameValidator" /path/to/my/import.csv

Finally, the --path-to-digital-objects option can be used when importing archival description records that include a digital object path in the digitalObjectPath CSV column. To import local digital objects using this CSV column, the digital objects must be available somewhere on the local file system - for more information on including digital objects in CSV imports, see:

• Digital object-related import columns

The --path-to-digital-objects option can then be used to include the path to where the related digital objects are located on the local filesystem, so that further validation checks can be run against them. Possible check outputs include:

• INFO: The digitalObjectPath column is not present in the CSV file.
• ERROR: The path to the digital object directory specified in the validation task option cannot be found or accessed
• WARNING: A digitalObjectURI value is also specified in the CSV for a given row. Note that in such a case, if you proceed with the import, AtoM will favor the digitalObjectURI column value and ignore the digitalObjectPath value for the target row.
• WARNING: There are digital objects in the folder that are not referenced by the CSV. These will not be imported if you proceed with the CSV import.
• ERROR: There are digital objects specified in the CSV that cannot be found in the related objects directory. The import will fail at this point if you attempt to proceed.
• WARNING: A digital object is referred to more than once in the CSV. If you choose to proceed, here are some notes on the outcome:
  • Only one master digital object will be stored. Clicking through on the reference display copy of the digital object shown on the description view page of each record will point to the same master.
  • Each description will have its own unique derivatives - this means you can delete the thumbnail and/or the reference display copy associated with one description without impacting the others
  • Deleting the master digital object on one description will not automatically delete it everywhere - other descriptions are unaffected, and the digital object will not actually be removed from the filesystem’s uploads directory until all description relations are deleted.

An example of running the task when providing a path to a digital objects directory:

php symfony csv:check-import --path-to-digital-objects="/usr/share/nginx/atom/my-upload-files" /path/to/my/import.csv

For more information on all the validation tests the task can run and how to interpret the results, please see:

• CSV Validation

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Check filepaths before importing digital objects¶

In addition to the general CSV validation task, AtoM also includes a command-line task to help double-check import files that involve digital objects. The task will take the path to a CSV file and the path to a directory of digital objects as inputs, and will report on potential errors, such as:

• Any digital objects in the filesystem directory that aren’t referenced in the CSV data
• Any digital objects that are referenced in CSV data but missing on the filesystem
• Any digital objects that are referenced more than once in the CSV data

This can be a useful way of verifying archival description or authority record CSV imports that use the digitalObjectPath column to link local digital objects during the import, or for double-checking the CSV accompanying a digital object load, before you actually import your data.

The basic syntax of the task is:

php symfony csv:digital-object-path-check path/to/objects/directory path/to/csv-file.csv

Where path/to/objects/directory is the path to where your digital object directory is located on the server, and path/to/csv-file.csv is the path to the CSV file with your import metadata.

By default, this task expects the column in the CSV with the digital object file paths to be named digitalObjectPath, as it is in the description and authority record CSV templates. However, the task also includes one user option, --csv-column-name, that can be used to specify a different CSV column to check. This allows you to use the task to review a digital object load task CSV for example, which uses a column named filename instead. An example:

php symfony csv:digital-object-path-check --csv-column-name="filename" /usr/share/nginx/atom/import-images/ /usr/share/nginx/atom/digital-object-load.csv

An example of the task output:

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Importing archival descriptions¶

Example syntax use (with the RAD CSV template):

php symfony csv:import lib/task/import/example/rad/example_information_objects_rad.csv

By typing php symfony help csv:import into the command-line from your root directory, without specifying the location of a CSV, you will able able to see the CSV import options available (pictured above). A brief explanation of each is included below. For full archival description CSV import documentation, please see:

• Prepare archival descriptions for CSV import
• Import new archival descriptions via CSV
• Fields that will support update imports
• Update existing descriptions via CSV import

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the import.

The --rows-until-update option can be used for a simple visual representation of progress in the command-line. Enter a whole integer, to represent the number of rows should be imported from the CSV before the command-line prints a period (e.g. `` . `` ) in the console, as a sort of crude progress bar. For example, entering --rows-until-update=5 would mean that the import progresses, another period will be printed every 5 rows. This is a simple way to allow the command-line to provide a visual output of progress. For further information on the --rows-until-update option and an example of the command-line option in use, see also the section below, Display the progress of an upload via the command-line interface (CLI).

You can use the --skip-rows option to skip X amount of rows in the CSV before beginning the import. This can be useful if you have interrupted the import, and wish to re-run it without duplicating the records already imported. --skip-rows=10 would skip the first 10 rows in the CSV file, for example. Note that this count does not include the header column, so in fact, the above example would skip the header column, and rows 2-11 in your CSV file.

The --error-log option can be used to specify a directory where errors should be logged. Note that this option has not been tested by Artefactual developers.

Use the --source-name option (described in the CSV import documentation here) to specify a source when importing information objects from multiple sources (with possibly conflicting legacy IDs), or when importing updates, to match the previous import’s source name. This will ensure that multiple related CSV files will remain related - so, for example, if you import an archival description CSV, and then supplement the authority records created (from the eventActors field in the description CSV templates) with an authority record CSV import, using the --source-name option will help to make sure that matching names are linked and related, instead of duplicate authority records being created. You can also use this option to relate a large import that is broken up into multiple CSV files, or when importing updates to existing descriptions. See the Legacy ID mapping: dealing with hierarchical data in a CSV section in the User manual for further tips and details on the uses of this option.

Tip

When no --source-name is set during import, the filename of the CSV will be used by default instead.

You can always check what source name was used for records created via an import by entering into edit mode and navigating to the Administration :term:` area <information area>` of the edit page - the source name used will be diplayed there:

The --default-legacy-parent-id option will allow the user to set a default parentID value - for any row in the CSV where no parentID value is included and no qubitParentSlug is present, this default value will be inserted as the parentID.

Similarly, the --default-parent-slug option allows a user to set a default qubitParentSlug value - wherever no slug value or parentID / legacyID is included, AtoM will populate the qubitParentSlug with the default value. If you are importing all rows in a CSV file to one parent description already in AtoM, you could use the --default-parent-slug option to specify the target slug of the parent, and then leave the legacyID, parentID, and qubitParentSlug columns blank in your CSV. Note that this example will affect ALL rows in a CSV - so use this only if you are importing all descriptions to a single parent!

By default, AtoM will build the nested set after an import task. The nested set is a way to manage hierarchical data stored in the flat tables of a relational database. However, as Wikipedia notes, “Nested sets are very slow for inserts because it requires updating left and right domain values for all records in the table after the insert. This can cause a lot of database thrash as many rows are rewritten and indexes rebuilt.” When performing a large import, it can therefore sometimes be desirable to disable the building of the nested set during the import process, and then run it as a separate command-line task following the completion of the import. To achieve this, the --skip-nested-set-build option can be used to disable the default behavior.

NOTE that the nested set WILL need to be built for AtoM to behave as expected. You can use the following command-line task, from the AtoM root directory, to rebuild the nested set if you have disabled it during import:

php symfony propel:build-nested-set

The task is further outlined on the Command line tools page - see: Rebuild the nested set.

Similarly, when using the user interface to perform an import, the import is indexed automatically - but when running an import via the command-line interface, indexing is disabled by default. This is because indexing during import can be incredibly slow, and the command-line is generally used for larger imports. Generally, we recommend a user simply clear the cache and rebuild the search index following an import - from AtoM’s root directory, run:

php symfony cc && php symfony search:populate

However, if you would like to index the import as it progresses, the --index option can be used to enable this. This is useful if you have a large database, and don’t want to have to re-index everything. For more information on indexing options, see: Populate search index.

The --update option can be used when you want to use a CSV import to update existing archival descriptions, instead of creating new records. There are 2 modes: --update="match-and-update" and --update="delete-and-replace. When used, AtoM will attempt to identify matching archival descriptions and, depending on which option is used, either update them in place, or delete the match and replace it with the new description in the CSV. For more information on how AtoM attempts to match incoming imports to existing descriptions, see: Matching criteria for archival descriptions.

For the “match-and-update” option, AtoM will update any information object related columns that have new data. Columns in the related CSV row that are left blank will not delete existing data - instead, they will be ignored and any existing data in the related field will be preserved.

With the “delete-and-replace” option, the matched archival description and any descendants (i.e. children) will be deleted prior to import. Note that related entities are not deleted - such as linked authority records, terms such as subject, place, or genre access points, accessions, etc. If you want these removed as well, you will need to manually delete them from the user interface following the delete-and-replace import. On import of the replacement record, AtoM will also not automatically link to the same entities. Instead, it will use the existing matching logic to determine if it should link to an existing linked record, or create a new one. For more information on how AtoM determines whether or not to link to an existing authority record, see: Attempting to match to existing authority records on import.

The --limit option can be used with --update to increase the likelihood of a successful match by limiting the match criteria to either records belonging to a specific repository, or matching a specific existing top-level description. It takes the slug of the related repository or top-level archival description as its value. For example, to import a CSV called “my-updates.csv” and update the descriptions of the John Smith Fonds, your command might look like this:

php symfony csv:import --update="match-and-update" --limit="john-smith-fonds"
/path/to/my-updates.csv

Normally, when attempting to match records, if AtoM fails to find a match candidate, it will proceed to import the row as a new record. However, you can use the --skip-unmatched option with --update to change this default behavior. When --skip-unmatched is used, then any records that do not match will be ignored during the import, and reported in the console log shown on the Job details page of the related import job (see: Manage jobs for more information). This is recommended if you are intending to only import updates to existing records. Note that --skip-unmatched will not work if it is not used in conjunction with the --update option.

Similarly, with new imports, you can use the --skip-matched option to skip any records that AtoM identifies as matching those you have already imported. This can be useful if you are uncertain if some of the records in your CSV have been previously imported - such as when passing records to a portal site or union catalogue. Any records that appear to match existing archival descriptions will be ignored during the import, and reported in the console log shown on the Job details page of the related import job. For more information on how AtoM attempts to match incoming imports to existing descriptions, see: Matching criteria for archival descriptions.

Normally during an update import when using match-and-update, the digital object will be deleted and re-imported as part of the update, even if the path or URI provided is the same - this is in case the digital object itself has changed at the source. However, there are 2 ways users can avoid this. The first is to include a digitalObjectChecksum column in the import CSV, and to populate the row with the exact same checksum used by AtoM when uploading the digital object (this can be seen in the file path to the master digital object). If you export a CSV with a digital object from AtoM, the checksum column and value is included in the export (see: CSV export). However, if you do not have the checksum value handy and you don’t want or need the digital object to be deleted and re-imported, then the other way to skip this process is to use the --keep-digital-objects option. When this option is used with --update="match-and-update", then the deletion of the existing digital object and its derivatives will be skipped.

The --skip-derivatives option can be used if you are using the Digital object-related import columns to import a digital object attached to your description(s). For every digital object uploaded, AtoM creates two derivative objects from the master digital object: a thumbnail image (used in search and browse results) and a reference display copy (used on the view page of the related archival description). The master digital object is the unaltered version of a digital object that has been uploaded to AtoM. When the --skip-derivatives option is used, then the thumbnail and reference display copy of your linked digital object will not be created during the import process. You can use the digital object derivative regeneration task to create them later, if desired - see: Regenerating derivatives.

Finally, the --roundtrip option is useful when attempting to update records that have been exported from the same system which you are trying to update via import (“roundtripping” implies exporting a CSV, making changes, and then re-importing it as an update). On export, AtoM populates the legacyId column with the unique database object ID value used in AtoM. When the --roundtrip option is used, AtoM will only look for exact matches on the legacyId in the CSV, comparing it against AtoM’s internal description object ID values and bypassing all other matching criteria. This can be useful when trying to update secondary matching criteria values such as the title, identifier, and/or repository associated with a description.

Because AtoM object IDs are always unique throughout an installation, this option provides a more reliable matching criteria when roundtripping descriptions in the same system. The --roundtrip should be used in conjunction with the --update option.

Example use:

php symfony csv:import --update="match-and-update" --roundtrip /path/to/rad_0000000001.csv

Normally, the --roundtrip option, when used, will first ask you if you have a backup of your database before proceding. However, you can skip this confirmation requirement by adding the --no-confirmation option as well.

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Importing events¶

Read more about importing events in the AtoM User manual documentation, here:

• Prepare events for CSV import
• Import events via CSV

Example use - run from AtoM’s root directory:

php symfony csv:event-import lib/task/import/example/example_events.csv

There are also various command-line options that can be used, as illustrated in the options depicted in the image below:

By typing php symfony help csv:event-import into the command-line from your root directory, without specifying the location of a CSV, you will able able to see the CSV import options available (pictured above). A brief explanation of each is included below.

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the import.

The --rows-until-update, --skip-rows, and --error-log options can be used the same was as described in the section above on importing descriptions. For more information on the --rows-until-update option, see also the section below, Display the progress of an upload via the command-line interface (CLI).

Use the --source-name to specify a source importing to a AtoM installation in which information objects from multiple sources have been imported, and/or to associate it explicitly with a previously-imported CSV file that used the same --source-name value. Further information is provided in the section on legacy ID mapping in the User Manual - see: Legacy ID mapping: dealing with hierarchical data in a CSV.

The --event-types option is deprecated, and no longer supported in AtoM.

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Importing repository records¶

Example use - run from AtoM’s root directory:

php symfony csv:repository-import
lib/task/import/example/example_repositories.csv

There are also various command-line options that can be used, as illustrated in the options depicted in the image below:

By typing php symfony help csv:repository-import into the command-line from your root directory, without specifying the location of a CSV, you will able able to see the CSV import options available (pictured above). A brief explanation of each is included below. For full details on archival institution CSV imports, please see:

• Prepare archival institution records for CSV import

• Import new archival institutions via CSV

• Update archival institutions via CSV import

  • Updating repository records in place via CSV import
  • Deleting and replacing repository records via CSV import

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the import.

The --rows-until-update, --skip-rows, and --error-log options can be used the same was as described in the section above on importing descriptions. For more information on the --rows-until-update option, see also the section below, Display the progress of an upload via the command-line interface (CLI).

Use the --source-name option (described in the CSV import documentation here) to specify the source name that will be added to the keymap table. This can be useful for improving the matching logic when importing updates - you can specify the same source name used as the was used during the original import for greater matching. By default in AtoM, when no source name is specified during import, the CSV filename will be stored in the keymap table as the source name.

The --index option will progressively add your imported repository records to AtoM’s search index as the import progresses. Normally when using the user interface to perform an import, the import is indexed automatically - but when running an import via the command-line interface, indexing is disabled by default. This is because indexing during import can sometimes be incredibly slow, and the command-line is generally used for larger imports. Generally, we recommend a user simply clear the cache and rebuild the search index following an import - from AtoM’s root directory, run:

php symfony cc && php symfony search:populate

However, if you would like to index the import as it progresses, the --index option can be used to enable this. This is useful if you have a large database, and don’t want to have to re-index everything. For more information on indexing options, see: Populate search index.

The --update option can be used when you want to use a CSV import to update existing archival institutions, instead of creating new records. There are 2 modes: --update="match-and-update" and --update="delete-and-replace. When used, AtoM will attempt to identify matching archival institution records and, depending on which option is used, either update them in place, or delete the match and replace it with the new repository record in the CSV. The matching criteria for repository records is based on an exact match on the authorized form of name of the existing repository. This means that you cannot use the --update option to update the name of your existing repositories, or AtoM will fail to find the correct match on import.

For the “match-and-update” option, AtoM will update any repository record related columns that have new data. Columns in the related CSV row that are left blank will not delete existing data - instead, they will be ignored and any existing data in the related field will be preserved.

With the “delete-and-replace” update option, AtoM will delete the matches prior to importing the CSV data as a new record to replace it.

Note that only the matched repository record is deleted during this process. Any related/linked entities (such as an authority record linked as being maintained by the repository, Thematic area or other repository access points, and linked archival descriptions) are not automatically deleted. If you also want these fully removed, you will have to find them and manually delete them via the user interface after the import.

Once the original matched repository record has been deleted, the CSV import proceeds as if the record is new. That is to say, just as AtoM does not automatically delete entities related to the original archival institution, it also not automatically re-link previously related entities.

Normally, when attempting to match records, if AtoM fails to find a match candidate, it will proceed to import the row as a new record. However, you can use the --skip-unmatched option with --update to change this default behavior. When --skip-unmatched is used, then any records that do not match will be ignored during the import, and reported in the console log shown on the Job details page of the related import job (see: Manage jobs for more information). This is recommended if you are intending to only import updates to existing records. Note that --skip-unmatched will not work if it is not used in conjunction with the --update option.

Similarly, with new imports, you can use the --skip-matched option to skip any records that AtoM identifies as matching those you have already imported. This can be useful if you are uncertain if some of the records in your CSV have been previously imported - such as when passing records to a portal site or union catalogue. Any records that appear to match existing repository records (based on the authorized form of name) will be ignored during the import, and reported in the console log shown on the Job details page of the related import job.

You can use the --upload-limit option to specify the default upload limit for repositories which don’t specify their uploadLimit in the CSV file. That is, if for example you performed a CSV import with the command-line option of --upload-limit=5, then for every repository in the CSV that does NOT have a value in the uploadLimit column, the default value of 5 GBs will be assigned. For more information on this functionality in the user interface, see: Set digital object upload limit for an archival institution.

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Importing authority records¶

The authority record import tool allows you to import data about people, familiies, and organizations. Note that authority records and their relationship data can also be imported via the user interface - for more information, see: Import new authority records via CSV and Import new authority record relationships via CSV.

You can view the example CSV files for authority records in the AtoM code (at lib/task/import/example/authority_records/) or they can be downloaded directly here:

• https://wiki.accesstomemory.org/Resources/CSV_templates#Authority_records

The primary documentation for preparing the authority record CSV template can be found in the User Manual, here:

• Prepare authority records for CSV import

Run the CSV import task from AtoM’s root directory. To use the example authority record import file that is included with the AtoM installation:

php symfony csv:authority-import lib/task/import/example/authority_records/example_authority_records.csv --index

There are also various command-line options that can be used, as illustrated in the options depicted in the image below:

By typing php symfony help csv:authority-import into the command-line from your root directory, without specifying the location of a CSV, you will able able to see the CSV import options available (pictured above). A brief explanation of each is included below.

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the import.

The --rows-until-update, --skip-rows, --error-log, and --index options can be used the same was as described in the section above on importing descriptions. For more information on the --rows-until-update option, see also the section below, Display the progress of an upload via the command-line interface (CLI). Use the --source-name option (described in the CSV import documentation here) to specify the source name that will be added to the keymap table. This can be useful for improving the matching logic when importing updates - you can specify the same source name used as the was used during the original import for greater matching. By default in AtoM, when no source name is specified during import, the CSV filename will be stored in the keymap table as the source name.

The --index option will progressively add your imported authority records to AtoM’s search index as the import progresses. Normally when using the user interface to perform an import, the import is indexed automatically - but when running an import via the command-line interface, indexing is disabled by default. This is because indexing during import can sometimes be incredibly slow, and the command-line is generally used for larger imports. Generally, we recommend a user simply clear the cache and rebuild the search index following an import - from AtoM’s root directory, run:

php symfony cc && php symfony search:populate

However, if you are running a small import or simply would like to index the import as it progresses, the --index option can be used to enable this. This is useful if you have a large database, and don’t want to have to re-index everything. For more information on indexing options, see: Populate search index.

The --update option can be used when you want to use a CSV import to update existing authority records, instead of creating new records. There are 2 modes: --update="match-and-update" and --update="delete-and-replace. When used, AtoM will attempt to identify matching authority records and, depending on which option is used, either update them in place, or delete the match and replace it with the new repository record in the CSV. The matching criteria for authority records is based on an exact match on the authorized form of name of the existing authority record. This means that you cannot use the --update option to update the authorized form of name of your existing authority records, or AtoM will fail to find the correct match on import.

For the “match-and-update” option, AtoM will update any authority record related columns that have new data. Columns in the related CSV row that are left blank will not delete existing data - instead, they will be ignored and any existing data in the related field will be preserved.

With the “delete-and-replace” update option, AtoM will delete the matches prior to importing the CSV data as a new record to replace it.

Note that only the matched authority record is deleted during this process. Any related/linked entities (such as a repository linked as the authority record’s maintainer, other authority records linked via a relationship, Occupation access points, and linked archival descriptions) are not also automatically deleted. If you also want these fully removed, you will have to find them and manually delete them via the user interface after the import.

Once the original matched authority record has been deleted, the CSV import proceeds as if the record is new. That is to say, just as AtoM does not automatically delete entities related to the original archival institution, it also not automatically re-link previously related entities.

The --limit option can be used with --update to increase the likelihood of a successful match by limiting the match criteria to records linked to a specific repository as its maintainer. This option takes the slug of the related repository as its value. For example, to import a CSV called “my-updates.csv” and update an authority record for Jane Doe belonging to the Example Archives, your command might look something like this example:

php symfony csv:authority-import --update="match-and-update"
--limit="example-archives" /path/to/my-updates.csv

Normally, when attempting to match records, if AtoM fails to find a match candidate, it will proceed to import the row as a new record. However, you can use the --skip-unmatched option with --update to change this default behavior. When --skip-unmatched is used, then any records that do not match will be ignored during the import, and reported in the console log shown on the Job details page of the related import job (see: Manage jobs for more information). This is recommended if you are intending to only import updates to existing records. Note that --skip-unmatched will not work if it is not used in conjunction with the --update option.

Similarly, with new imports, you can use the --skip-matched option to skip any records that AtoM identifies as matching those you have already imported. This can be useful if you are uncertain if some of the records in your CSV have been previously imported - such as when passing records to a portal site or union catalogue. Any records that appear to match existing authority records (based on the authorized form of name) will be ignored during the import, and reported in the console log shown on the Job details page of the related import job.

php symfony csv:authority-relation-import lib/task/import/example/authority_records/example_authority_record_relationships.csv --index

Import accession records¶

The accession record import tool allows you to import data about your accessions. Additionally, when importing descriptions as well, you can use the subsequent archival description CSV import to create a link between your accession records and your descriptions, by adding an accessionNumber column in the archival description CSV and populating it with the exact accession number(s) used during your accessions data import.

Alternatively, you can use the qubitParentSlug column to link existing descriptions in AtoM to new or updated accessions records via your import - for more details see the User Manual: Prepare accession records for CSV import.

An example CSV template file is available in the lib/task/import/example/example_accessions.csv directory of AtoM, or it can be downloaded here:

• https://wiki.accesstomemory.org/Resources/CSV_templates#Accessions

The primary documentation for preparing your accession record data in a CSV file for import can be found in the User Manual:

• Prepare accession records for CSV import

Please review the guidance provided there carefully prior to running a command line import. The use of the command-line task and its options are outlined below.

Example use - run from AtoM’s root directory:

php symfony csv:accession-import /path/to/my/example_accessions.csv

There are also a number of options available with this command-line task.

By typing php symfony help csv:accession-import into the command-line from your root directory, without specifying the location of a CSV, you will able able to see the CSV import options available (pictured above). A brief explanation of each is included below.

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the import.

Use the --source-name to specify a source importing to a AtoM installation in which accessions and information objects from multiple sources have been imported, and/or to associate it explicitly with a previously-imported CSV file that used the same --source-name value. An example is provided in the section on legacy ID mapping in the User Manual - see: Legacy ID Mapping.

The --rows-until-update, --skip-rows, --error-log, and --index options can be used the same was as described in the section above on importing descriptions. For more information on the --rows-until-update option, see also the section below, Display the progress of an upload via the command-line interface (CLI).

The --index option will progressively add your imported accession records to AtoM’s search index as the import progresses. Normally when using the user interface to perform an import, the import is indexed automatically - but when running an import via the command-line interface, indexing is disabled by default. This is because indexing during import can sometimes be incredibly slow, and the command-line is generally used for larger imports. Generally for very large imports we recommend a user simply clear the cache and rebuild the search index following an import - from AtoM’s root directory, run:

php symfony cc && php symfony search:populate

However, if you would like to index the import as it progresses, the --index option can be used to enable this. This is useful if you have a large database, and don’t want to have to re-index everything. For more information on indexing options, see: Populate search index.

The --assign-id option can be used to automatically assign the next unique accession number value to each incoming record, based on the accession mask and counter settings available in Admin > Settings > Identifiers. For more information on these settings, see:

• Enable accession mask
• Accession mask
• Accession counter

Typically, populating the accessionNumber column in an accession record CSV import is required for the row not to be skipped. However, when the --assign-id option is used, you can leave this column blank in the CSV file. On import, AtoM will add the next available unique accession number value, based on the mask and counter settings.

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Import deaccession records¶

The deaccession import tool allows you to import data about deaccession activies, which can be appended to accession records in AtoM. For more general information on working with deaccession records in AtoM, consult the User manual: Deaccession records. For the task to succeed, an accession number for an existing accession must be provided for each row - it is not possible to create new accession records while importing deaccession CSV data.

An example CSV template file is available in the lib/task/import/example/example_deaccessions.csv directory of AtoM, or it can be downloaded here:

• https://wiki.accesstomemory.org/Resources/CSV_templates#Deaccession_records

The expected CSV will have 7 columns, corresponding to various fields available in the Deaccession record template. These include:

• accessionNumber: expects the accession number of an existing accession record in AtoM as input. If no match is found for an existing accession, the console will provide a warning, the row will be skipped, and the task will continue.
• deaccessionNumber: an identifier for the deaccession. Free text, will support symbols and typographical marks such as dashes and slashes.
• date: expects a date value in ISO-8601 format (YYYY-MM-DD).
• scope: expects one of the controlled terms from the “Scope” field in the AtoM deaccession record template. English options include “Whole” and “Part”.
• description: Free-text. Identify what materials are being deaccessioned.
• extent: Free-text. Identify the number of units and the unit of measurement for the amount of records being deaccessioned.
• reason: Free-text. Provide a reason why the records are being deaccessioned.
• culture: Expects a 2-letter ISO 639-1 language code as input (e.g.: en, fr, es, pt, etc).

Example use - run from AtoM’s root directory:

php symfony csv:deaccession-import /path/to/my/example_accessions.csv

There are also a number of options available with this command-line task.

By typing php symfony help csv:deaccession-import into the command-line from your root directory, without specifying the location of a CSV, you will be able to see the CSV import options available (pictured above). A brief explanation of each is included below.

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the import.

The --rows-until-update, --skip-rows, and --error-log options can be used the same was as described in the section above on importing descriptions. If you wish a summary of warnings reported in the console log, you can use the --error-log option - it takes a path to a new text file as input, and will copy all console warnings to this log file. Acceptable file extensions for the log file are .txt or .log. For more information on the --rows-until-update option, see also the section below, Display the progress of an upload via the command-line interface (CLI).

More than 1 row of data (i.e more than 1 deaccession record) can be associated with the same accession record. To prevent accidental exact duplicates, by default AtoM will skip any rows where all data is identical to a row preceding it, and will report the skipped record in the console log. If you are intentionally importing duplicate deaccession records, you can use the --ignore-duplicates option.

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Import physical storage containers and locations¶

This task will allow for the import of physical storage data, as well as updates to existing physical storage containers, via a CSV file. Read more about managing physical storage data in AtoM in the User manual:

• Physical storage

The basic syntax for this task is:

php symfony csv:physicalobject-import /path/to/storage.csv

The CSV filename and path (shown as the example /path/to/storage.csv above) must be a valid path to a CSV file that is readable by the current user. The CSV file must use UTF-8 character encoding if it includes characters outside of the basic ASCII character set. The CSV file formatting must use a comma for the column delimiter. Literal values that include a comma character must be enclosed in double-quotes (e.g. “Shelf 10, Box 12345”). Line endings can be Windows (\r\n) or Linux (\n) formatted. For more general suggestions on properly preparing your CSV for import, see: Verify character encoding and line endings.

You can find a copy of the example physical object CSV import template on the AtoM wiki, or stored locally in AtoM’s code at lib/task/import/example/example_physicalobject.csv

The CSV template contains 6 columns, summarized below:

• legacyID: A unique value, used to capture database identifiers from legacy systems during data migrations for easier troubleshooting. Not required for new import data, but recommended. Can be any alphanumeric characters. Does not display in AtoM’s user interface.
• name: Free-text. The container name to be used in AtoM
• type: Type of container. Links to AtoM’s Physical Object Type taxonomy. See Manage physical storage types in the User manual for more information and default terms. A new term in the CSV data will create a new corresponding term in the Physical Object Type taxonomy in AtoM on import.
• location: Free text. Used to add information about a container’s location.
• culture: Language of the import data. Expects ISO 639-1 two-letter language codes. If left unpopulated, it will default to en during import.
• descriptionSlugs: multi-value input for the slugs of related archival descriptions. When linking a container row to multiple archival descriptions, separate each slug value with a | pipe separator.

By typing php symfony help csv:physicalobject-import into the command-line without specifying the path to a CSV file, you can see the options available on the csv:physicalobject-import command:

The --application, --env, and --connection options should not be used - AtoM requires the use of the pre-set defaults for symfony to be able to execute the import.

The --culture option can be used to specify a default culture code for the CSV import using a two letter ISO 639-1 code (e.g. en for English, fr for French). The culture column in the CSV import file can be used to specify a culture for that row, and will override the default culture value set with this option. The default value if this option is not specified is en for English.

The --debug or -d option outputs timing data for various import subprocesses to help identify and diagnose bottlenecks.

The --empty-overwrite or -e option will cause empty columns to overwrite existing data in AtoM when updating existing physical storage data via the --update option. This option must be used with the --update option.

The --error-log or -l option can be used to specify a file to log errors encountered during import. Note that it is possible for critical errors in the import to halt the import completely, in which case the critical error will not be written to the log file, but will be output to the console (STDERR) instead. Other error messages and warnings will be logged to the file. Output that is not a warning or error (e.g. progress indicators) will not be logged to the error log, but will be output to console (STDOUT) and can be saved to file if desired by redirecting STDOUT to a file. This option expects a path to where the log should be output. Example:

php symfony physicalobject:import --error-log="/usr/share/nginx/atom/import-log.txt" lib/task/import/example/example_physicalobject.csv

You can leave the file extension off the error log path, but the path must end in the file name you want used for the log file. Acceptable file extensions include .log or .txt.

The --header option can be used to specify a comma delimited list of strings (e.g. --header="name,type,location,culture") that will be used as column names for the import. This option should not be used for CSV import files that already include column headers (such as the example_physicalobject.csv template), as the first row will be imported as physical object data. If the --header option is not used, the first row of the CSV file will be used as column header names. The number of column names passed to --header must match the number of columns in the import file.

The --index or -i option adds imported data to the AtoM search index incrementally during execution of the import script. For large imports it may be desirable to omit the index option as the import will run more quickly, and then run php symfony search:populate to update the search index after the import is complete. For more information on populating the search index, see: Populate search index.

The --multi-match option determines how the import script will handle an import name that matches more than one physical object name in AtoM when the --update option is used. It expects one of 3 values as input: “skip”, “first”, or “all.” The default value of “skip” will not update any existing records if the import name matches multiple existing records, and will report the matched and skipped rows in the error log or STDERR. The “first” option will update only the first matching record in the database, and skip subsequent matches - skipped matches will be reported in the error log or STDERR. Please be aware that the sort order of the matched records may not match your expectations for ordering based on the database primary key or default ordering. The “all” option will update all records in the database that match the import name.

The --partial-matches or -p option will match any records in the AtoM database where record name starts with the import name value. For instance, an import name of “box” will match existing records “boxes”, “box1”, and “box-hollinger”, but will not match “hollinger-box” or “bo”. Note that matches are not case sensitive, and the --multi-match option will determine which matched records are updated in the case of multiple matching records.

The --rows-until-update or -r option controls how often the import task will output information about the progress of the import process. For more on this general import option, see below: Display the progress of an upload via the command-line interface (CLI).

The --skip-unmatched or -s option must be used with the --update option, and prevents the unwanted creation of new records in the database. CSV rows that match an existing record in the database (by name) will update the matched record or records (see the --multi-match option for information on multiple matches). Normally, when a match is not found duing an update import, AtoM will treat an unmatched row as new data, and will create a new container - however, with the skip-unmatched option used as well, CSV records that do not match an existing database record will be ignored. A warning message will be output to the error log or STDERR for each CSV record that is skipped because it does not match an existing container record.

The --skip-rows or -o option will skip the specified number of rows in the CSV, and then start importing data after that point. For instance, specifying --skip-rows=100 would start the import at row 101 of the CSV import file. The --skip-rows option is normally used to resume an import that failed or was aborted to prevent duplicating already imported data. Please note that unless the --header option is used, the first row of the CSV file is assumed to contain field names rather than data, and this row is not counted when determining the number of skipped rows. For example, if the --header option is not specified and --skip-rows=10, the first eleven rows of the CSV file (i.e. the header plus 10 data rows) will be skipped, and the 12th CSV row will be the first record imported.

The --source-name option is used to logically group multiple imports together if a single data set has been split into multiple CSV files to prevent running out memory during an import, or to limit the time each import takes to complete. For exmaple, --source-name="January 2020 import" could be used for multiple CSV files that comprise a January 2020 data update.

Finally, the --update or -u option will attempt to match each import record with one or more (see --multi-match) existing physical storage records in the database, and will use the matching CSV row data to update the matched record(s).

A match is determined solely on physical object name by default (though see the --partial-match option, which modifies the matching criteria), and matching is not case sensitive (i.e. “box-1234” will match “BOX-1234”). For example, if the --update option is used, and the CSV import file includes a container named “box-1234”, and there is an existing physical object in AtoM named “Box-1234,” then the existing physical object will be updated with the CSV data instead of creating a new physical object in AtoM.

Please note that the --empty-overwrite, --skip-unmatched, --multi-match, and --partial-match options all affect the match and update criteria when using the --update option.

An example

The following example import command will:

• Import a CSV of physical storage data as an update to existing data
• Skip any unmatched rows
• Update all matching records where multiple matches on container name are found
• Allow for partial name matches to be considered acceptable matching criteria
• Skip the first 10 data rows of the CSV
• Report any non-fatal errors to a file called “errors.log”
• Update the search index as the import progresses

php symfony csv:physicalobject-import --update --skip-unmatched --multi-match="all" --partial-match --skip-rows=10 --error-log="/usr/share/nginx/atom/errors.log" --index /path/to/my/storage.csv

This example could also be written as follows, use the short names for the options:

php symfony csv:physicalobject-import -u -s --multi-match="all" -p -o=10 -l="/usr/share/nginx/atom/errors.log" -i /path/to/my/storage.csv

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Display the progress of an upload via the command-line interface (CLI)¶

The various CSV import tools allow the use of the --rows-until-update command-line option to display the current row of CSV data being imported. This is an extremely simplified way to indicate progress graphically via the command-line - the user sets a numerical value for the number of rows the task will progress before an update, and then the task will output a dot (or period ) in the command-line every time the indicated number of rows has been processed in the current CSV.

Example use reporting progress every 5 rows:

php symfony csv:import
lib/task/import/example/rad/example_information_objects_rad.csv
--rows-until-update=5

This can be useful for large imports, to ensure the import is still progressing, and to try to roughly determine how far the task has progressed and how long it will take to complete.

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How it works: using the keymap table and the import source name¶

When a CSV import is performed in AtoM, two values are added to a database table called the keymap table for every row in the CSV:

• legacyId: The legacyId value used in the CSV for that row will be stored in the keymap table’s source_id field
• source name: A source name for the CSV will be stored in the source_name field of the keymap table. The command-line CSV import tasks (such as the archival description import task) include a --source-name option that allows a user to manually define the source name used; if this is not specified (such as during imports via the user interface, where no option for manually entering a source name is provided), then the filename of the CSV (including the .csv extension) is used by default.

These values are also used in the matching logic used for update imports. For more general information on the use of the keymap table values, see:

• Importing archival descriptions
• Matching criteria for archival descriptions (importing archival description CSV updates)

This audit task will use the sourcename of the import to find related values in the keymap table, and then will compare every CSV row’s legacyId values with those found in the source_id column of the keymap database table.

If a row is found in the CSV without a corresponding match in the keymap table, then this will be reported in the console. You can then address the issue however you’d prefer, such as:

• Creating a new CSV with the missing rows as a follow-up import
• Loading a database backup and then re-performing the original import
• Using the Delete descriptions created by a CSV import task described below to delete the results of the first import, before re-performing the import
• Manually creating the missing records
• Etc.

Task usage¶

The basic syntax for the CSV audit import task is:

php symfony csv:audit-import sourcename filename

Where sourcename represents the source name used during the original CSV import (which will default to the CSV filename, including the extension, if none is defined during import), and where filename represents the current path and filename where the original import CSV is located, so it can be used for comparison against AtoM’s keymap table.

Sample task execution and output on a 3-row description CSV:

By running php symfony help csv:audit-import we can also see the console’s help output for the task:

The --application, --env, and connection options should not be used - AtoM requires the uses of the pre-set defaults for Symfony to be able to execute the task.

The --target-name option is used to specify the entity type of the records in the accompanying CSV. The default when this option is not specified is information_object (i.e. archival description). Supported options include:

• information_object (i.e. archival description)
• actor (i.e. authority record)
• repository (i.e. archival institution)
• event
• accession
• physical_object (i.e. physical storage)

Below is an example command to audit an authority record CSV import, where the original import source name was set to myauthoritiesimport:

php symfony csv:audit-import --target-name='actor' 'myauthoritiesimport' lib/task/import/example/authority_records/example_authority_records.csv

Finally, the --id-column-name option is useful if you are using a transformation script as part of an automated process, such as a migration from a different legacy system. This option can be used to tell AtoM to use a different CSV column name instead of the default legacyId column when comparing values in the CSV against the source_id column in the keymap table of AtoM’s database.

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How it works: using the source name as the task parameter¶

When a CSV import is performed in AtoM, two values are added to a database table called the keymap table for every row in the CSV:

• legacyId: The legacyId value used in the CSV for that row will be stored in the keymap table’s source_id field
• source name: A source name for the CSV will be stored in the source_name field of the keymap table. The command-line CSV archival description import task includes a --source-name option that allows a user to manually define the source name used; if this is not specified (such as during imports via the user interface, where no option for manually entering a source name is provided), then the filename of the CSV (including the .csv extension) is used by default.

These values are used in the matching logic used for update imports. For more general information on the use of the keymap table values, see:

• Importing archival descriptions
• Matching criteria for archival descriptions (importing CSV updates)

This command-line task to delete records from an import will also use the source name value of the original import, stored in the keymap table, to identify records for deletion.

Finding the source name of a record¶

You can always check in the user interface what source name was used for records created via an import by entering into edit mode and navigating to the Administration area of the edit page - the source name used will be diplayed there:

Alternatively, you can use SQL to find the source name and ID values associated with a description. See:

• Accessing the MySQL command prompt
• Get the source name and ID of a description for import updating

Task usage¶

The basic syntax for the command-line task to delete archival description records from a previous CSV import is:

php symfony import:delete sourcename

Where sourcename represents the source_name value associated with the import, stored in AtoM’s keymap database table.

By running php symfony help import:delete we can also see the console’s help output for the task:

The --application, --env, and connection options should not be used - AtoM requires the uses of the pre-set defaults for Symfony to be able to execute the task.

Normally when run, the task will first remind you to create a database backup before proceeding, and will ask for confirmation before executing the task:

However to support scripted automation, or for a system administrator to simply skip this confirmation step, you can use the --force (or -f) option to bypass confirmation.

The --verbose (or -v) option can be used to provide a more detailed output in the console as the task progresses, which can aid in debugging.

Additionally, if you would like to save the console output for review and debugging, you can write the console log output to a file, by using the --logfile (or -l) option and providing a file path and filename for the target logfile, as in the example below:

php symfony import:delete --verbose --logfile="path/to/my/logfile.txt" my-bad-import.csv

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Using the digital object load task¶

Before using this task, you will need to prepare:

• A CSV file with 2 columns - EITHER information_object_id and filename, OR identifier and filename, OR slug and filename . See above for further details on each option.
• A directory with your digital objects inside of it

Here is a sample image of what the CSV looks like when the identifier is used, and the CSV is prepared in a spreadsheet application:

The task also includes an option to provide a default file path prefix to your digital object directory (explained further below). Here is an example of a CSV prepared using the slug column, with the full path to each object omitted:

You can see the options available on the CLI task by typing in the following command:

php symfony help digitalobject:load

The --application, --env, and --connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the import.

By default, the digital object load task will not index the collection as it runs. This means that normally, you will need to manually repopulate the search index after running the task. Running without indexing allows the task to complete much more quickly - however, if you’re only uploading a small set of digital objects, you can choose to have the task index the collection as it progresses, using the --index (or -i) option.

Similarly, the task will typically update AtoM’s nested set (used to manage hierarchical relationships) as it progresses, but this can slow import time. If desired, you can use the --skip-nested-set-build option to omit nested set updates, and then manually run the nested set build task after the digital object load task completes.

The --limit option enables you to set the number of digital objects imported via CSV using the digital object load task.

The --link-source option could apply in a use case where an institution might typically store master digital objects in a separate local repository. Rather than maintain multiple copies of every digital object, you could use the --link-source option to load objects via local filepath stored to a source file in the database. Essentially, when you use the --link-source option, the digital object load task will behave like an external digital object being uploaded via URI, and ultimately, the source “master” file(s) are not copied to the uploads directory.

The --path option will allow you to simplify the filename column in your CSV, to avoid repetition. If all the digital objects you intend to upload are stored in the same folder, then adding /path/to/my/folder/ to each object filename seems tedious - your filename column will need to look something like this:

filename
/path/to/my/folder/image1.png
/path/to/my/folder/image2.jpg
/path/to/my/folder/text1.pdf
etc...

To avoid this when all digital objects are in the same directory, you can use the --path option to pre-supply the path to the digital objects - for each filename, the path supplied will be appended. Note that you will need to use a trailing slash to finish your path prefix - e.g.:

php symfony digitalobject:load --path="/path/to/my/folder/"
/path/to/my/spreadsheet.csv

The --attach-only option changes the behavior of where the task will attach the associated digital object. When used, rather than attaching the digital object to the target description, AtoM will instead always create a new stub child description, and attach the digital object there. This can be useful if you want to pass multiple digital objects to the same parent description - for example, attaching individual TIFF files of book pages as children to an item-level record describing the book.

The --replace option can be used if you want to overwrite existing digital objects with those indicated in the CSV. When used, AtoM will delete any existing attached digital object it finds and then attach the new object.

TO RUN THE DIGITAL OBJECT LOAD TASK

php symfony digitalobject:load /path/to/your/loadfile.csv

NOTES ON USE

• If a single CSV row points to a description that already has a digital object, then the row will be skipped and reported in the console
• If the CSV contains multiple rows pointing at a description that already has a digital object, then new stub child descriptions will be created below the target, and digital objects will be attached there. If child descripitons already exist, they will be ignored (meaning, running the task more than once will result in duplicate child descriptions).
• Note that the --attach-only and --replace options change the above default behaviors when multiple rows point to one description. Read the option descriptions above for more information.
• Remember to repopulate the search index afterwards if you haven’t used the --index option! For more information, see: Populate search index.
• Additionally, if you use the --skip-nested-set-build option, you will need to manually rebuild the nested set after the task has completed. See: Rebuild the nested set.

Regenerating derivatives¶

Sometimes the digitalobject:load task won’t generate the thumbnail and reference images properly for digital objects that were loaded (e.g. due to a crash or absence of convert installed, etc.). In this case, you can regenerate these thumbsnail/reference images using the following command:

php symfony digitalobject:regen-derivatives

For more information on this task and the options available, see: Regenerating derivatives.

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Export archival descriptions in CSV from the command-line¶

The CSV export task is a command-line task that will allow a system administrator with access to the root AtoM directory to export some or all archival descriptions held in AtoM in CSV format. This template is the same as that used for CSV import, and the export produced can therefore also be used to import data into another AtoM instance.

Example use - run from AtoM’s root directory:

php symfony csv:export /path/to/my/export-location/example.csv

If you specify just a path to a directory, AtoM will generate a name for the CSV. If you wish to name your CSV file, then you can specify the target filename in the path (e.g. in the above example, “example.csv” is the target filename).

CSV export task options¶

By typing php symfony help csv:export into the command-line from your root directory, without specifying an export location of the CSV, you will able able to see the CSV import options available (pictured above). A brief explanation of each is included below.

The --application, --env, and connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the export.

The --items-until-update option can be used for a simple visual representation of progress in the command-line. Enter a whole integer, to represent the number of rows should be imported from the CSV before the command-line prints a period (e.g. `` . `` ) in the console, as a sort of crude progress bar. For example, entering --items-until-update=5 would mean that the import progresses, another period will be printed every 5 rows. This is a simple way to allow the command-line to provide a visual output of progress.

The --criteria option can be added if you would like to use raw SQL to target specific descriptions.

Example 1: exporting all draft descriptions

php symfony csv:export --criteria="i.id IN (SELECT object_id FROM status
WHERE status_id = 159 AND type_id = 158)" /path/to/my/exportFolder

If you wanted to export all published descriptions instead, you could simply change the value of the status_id in the query from 159 (draft) to 160 (published).

Example 2: exporting all descriptions from a specific repository

To export all descriptions associated with a particular archival institution, you simply need to know the slug of the institution’s record in AtoM. In this example, the slug is “example-repo-slug”:

php symfony csv:export --criteria="i.repository_id = (SELECT object_id FROM
slug WHERE slug='example-repo-slug')" /path/to/my/exportFolder

Example 3: exporting specific descriptions by title

To export 3 fonds titled: “779 King Street, Fredericton deeds,” “1991 Canada Winter Games fonds,” and “A history of Kincardine,” You can issue the following command:

sudo php symfony csv:export --criteria="i18n.title in ('779 King Street,
Fredericton deeds', '1991 Canada Winter Games fonds', 'A history of
Kincardine')" path/to/my/exportFolder

You could add additional archival descriptions of any level of description into the query by adding a comma then another title in quotes within the ()s.

The --current-level-only option can be used to prevent AtoM from exporting any children associated with the target descriptions. If you are exporting fonds, then only the fonds-level description would be exported, and no lower-level records such as series, sub-series, files, etc. This might be useful for bulk exports when the intent is to submit the exported descriptions to a union catalogue or regional portal that only accepts collection/fonds-level descriptions. If a lower-level description (e.g. a series, file, or item) is the target of the export, its parents will not be exported either.

The --single-slug option can be used to to target a single archival unit (e.g. fonds, collection, etc) for export, if you know the slug of the target description.

Example use

php symfony csv:export --single-slug="test-export"
/path/to/my/directory/test-export.csv

The --public option is useful for excluding draft records from an export. Normally, all records in a hierarchical tree will be exported regardless of publication status. When using the --public option, only records with a publication status of “Published” will be exported.

The --standard option allows you to determine if the Canadian RAD template or the international ISAD(G) template is used when exporting. The default if the option is not specified is ISAD(G). AtoM maintains several different standards-based templates (see: Descriptive standards) and there are currently 2 different CSV import/export templates - the default ISAD(G) template, and the Canadian RAD template (because there are many different fields in the RAD template). Other standards-template users (such as DACS users) are encouraged to use the ISAD template.

The --rows-per-file option can be used when performing large exports, to break the export into multiple CSV files. You can specify a whole integer representing the number of rows to be included in a single CSV file, before the export task will begin a new CSV. When invoking the task, remember to specify the destination target to a directory, not a filename.

Example use

php symfony csv:export --rows-per-file="1000" /path/to/my/export-directory/

In the above example, when 1000 rows are added to the first CSV, AtoM will export it, and begin a second CSV - and so on.

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Export authority records in CSV from the command-line¶

The CSV authority export task is a command-line task that will allow a system administrator with access to the root AtoM directory to export some or all authority records held in AtoM in CSV format. This template is the same as that used for the authority record CSV import, and the export produced can therefore also be used to import data into another AtoM instance.

Example use - run from AtoM’s root directory:

php symfony csv:authority-export /path/to/my/export-location/example.csv

If you specify just a path to a directory, AtoM will generate a name for the CSV. If you wish to name your CSV file, then you can specify the target filename in the path (e.g. in the above example, “example.csv” is the target filename).

If your database includes relationships between authority records, these will exported along with the authority records CSV file in a separate relations CSV file.

CSV authority export task options¶

By typing php symfony help csv:export into the command-line from your root directory, without specifying an export location of the CSV, you will able able to see the CSV import options available (pictured above). A brief explanation of each is included below.

The --application, --env, and connection options should not be used - AtoM requires the uses of the pre-set defaults for symfony to be able to execute the export.

The --items-until-update option can be used for a simple visual representation of progress in the command-line. Enter a whole integer, to represent the number of rows should be imported from the CSV before the command-line prints a period (e.g. `` . `` ) in the console, as a sort of crude progress bar. For example, entering --items-until-update=5 would mean that the import progresses, another period will be printed every 5 rows. This is a simple way to allow the command-line to provide a visual output of progress.

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